Tools

Type: Experimental Tool
Project: Tolias U01

Core service provided by CSHL for in situ sequencing with BARseq on barcoded rabies virus infected brain.

Type: QC / Proofreading/ Data Validation
Project: Rivlin U01

A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions.

Type: QC / Proofreading/ Data Validation
Project: Rivlin U01

NeuVue is a proofreading task management framework and platform for scalable curation of machine segmentation and neural circuit reconstruction from high-resolution EM connectomics data.

Type: Data Processing
Project: Fischl U01

A Python tool for multiscale nerve fiber enhancement and 3D orientation analysis in large high-resolution volumetric brain tissue reconstructions acquired by two-photon scanning or light-sheet fluorescence microscopy.

Type: Data Processing
Project: Fischl U01

A method for 3D automatic vessel segmentation across a wide range of contrasts and resolutions.

Type: Data Analysis
Project: Fischl U01

A PyTorch-based tool for automatic 3D vascular segmentation in serial-sectioning optical coherence tomography (sOCT).

Type: Data Repository
Project: Zeng U24

A data ecosystem for 3D and 4D neuroscience data, with tools and workflows for storage, access, visualization, and analysis of Electron Microscopy and X-ray Micro/Nano Tomography.

Type: Data Repository
Project: Yendiki UM1

Platform for publishing, sharing, and processing neuroscientific data.

Type: Cloud Workbench
Project: Zeng U24

A cloud platform for biomedical data analysis, secure sharing, and global collaboration. 

Type: Data Repository
Project: Pestilli U24

A cloud based platform for processing analyzing neuroscientific data via custom data workflows.